{ "_id": "6a101086acfb0bcc41c81e70", "Package": "pompom", "Type": "Package", "Title": "Person-Oriented Method and Perturbation on the Model", "Version": "0.2.1", "Authors@R": "c(person(\"Xiao\", \"Yang\", email = \"vwendy@gmail.com\", role = c(\"cre\", \"aut\")),person(\"Nilam\", \"Ram\", email = \"nur5@psu.edu\", role = \"aut\"),person(\"Peter\", \"Molenaar\", email = \"pxm21@psu.edu\", role = \"aut\"))", "Maintainer": "Xiao Yang ", "Description": "An implementation of a hybrid method of person-oriented\nmethod and perturbation on the model. Pompom is the initials of\nthe two methods. The hybrid method will provide a multivariate\nintraindividual variability metric (iRAM). The person-oriented\nmethod used in this package refers to uSEM (unified structural\nequation modeling, see Kim et al., 2007, Gates et al., 2010 and\nGates et al., 2012 for details). Perturbation on the model was\nconducted according to impulse response analysis introduced in\nLutkepohl (2007). Kim, J., Zhu, W., Chang, L., Bentler, P. M.,\n& Ernst, T. (2007) . Gates, K. M.,\nMolenaar, P. C. M., Hillary, F. G., Ram, N., & Rovine, M. J.\n(2010) . Gates, K. M., &\nMolenaar, P. C. M. (2012)\n. Lutkepohl, H. (2007,\nISBN:3540262393).", "License": "GPL-2", "Encoding": "UTF-8", "LazyData": "true", "RoxygenNote": "7.1.1", "VignetteBuilder": "knitr", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-22 08:11:05 UTC", "User": "root" }, "Author": "Xiao Yang [cre, aut], Nilam Ram [aut], Peter Molenaar [aut]", "Config/pak/sysreqs": "cmake libglpk-dev make libicu-dev libjpeg-dev\nlibpng-dev libuv1-dev libxml2-dev", "Repository": "https://vwendy.r-universe.dev", "Date/Publication": "2021-02-14 23:40:02 UTC", "RemoteUrl": "https://github.com/cran/pompom", "RemoteRef": "HEAD", "RemoteSha": "3df1a4ce8648b28b7b9cf72f4d5b9d3bfc5b3db3", "MD5sum": "77ae81b894d50e69abb4dcd9a25d35f4", "_user": "vwendy", "_type": "src", "_file": "pompom_0.2.1.tar.gz", "_fileid": "6e74f445a266c4ee37361d894de62affaa0b5fff774b1df43fea11d50e9e1fd5", "_filesize": 1942531, "_sha256": "6e74f445a266c4ee37361d894de62affaa0b5fff774b1df43fea11d50e9e1fd5", "_created": "2026-05-22T08:11:05.000Z", "_published": 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"Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "testthat", "role": "Suggests" } ], "_owner": "cran", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 0, "_contributors": [ { "user": "vwendy", "count": 3, "uuid": 335249 } ], "_userbio": { "uuid": 335249, "type": "user", "name": "Wendy" }, "_downloads": { "count": 233, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/pompom" }, "_searchresults": 26, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/pompom.html", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_realowner": "vwendy", "_cranurl": false, "_releases": [ { "version": "0.1.4", "date": "2018-01-11" }, { "version": "0.2.0", "date": "2018-07-13" }, { "version": "0.2.1", "date": "2021-02-15" } ], "_exports": [ "iRAM", "iRAM_equilibrium", "model_summary", "parse_beta", "plot_integrated_time_profile", "plot_iRAM_dist", "plot_network_graph", "plot_time_profile", "uSEM" ], "_datasets": [ { "name": "bootstrap_iRAM_2node", "title": "Bootstrapped iRAM (including replications of iRAM and corresponding time profiles) for the bivariate time-series (simts2node)", "object": "bootstrap_iRAM_2node", "class": [ "list" ], "fields": [], "table": false, "tojson": true }, { "name": "bootstrap_iRAM_3node", "title": "Bootstrapped iRAM (including replications of iRAM and corresponding time profiles) for the 3-variate time-series (simts)", "object": "bootstrap_iRAM_3node", "class": [ "list" ], "fields": [], "table": false, "tojson": true }, { "name": "simts_2node", "title": "Simulated bivariate time-series data", "object": "simts_2node", "class": [ "data.frame" ], "fields": [ "happy", "sad" ], "rows": 200, "table": true, "tojson": true }, { "name": "simts_3node", "title": "Simulated 3-variate time-series data", "object": "simts_3node", "class": [ "data.frame" ], "fields": [ "happy", "sad", "other.communion" ], "rows": 100, "table": true, "tojson": true }, { "name": "true_beta_2node", "title": "The true beta matrix (4 by 4) used in simulation.", "object": "true_beta_2node", "class": [ "matrix", "array" ], "fields": {}, "rows": 4, "table": true, "tojson": true }, { "name": "true_beta_3node", "title": "The true beta matrix (6 by 6) used in simulation.", "object": "true_beta_3node", "class": [ "matrix", "array" ], "fields": {}, "rows": 6, "table": true, "tojson": true }, { "name": "usemmodelfit", "title": "Model fitbased on similated time-series by uSEM.", "object": "usemmodelfit", "class": [ "lavaan" ], "fields": [], "table": false, "tojson": false } ], "_help": [ { "page": "bootstrap_iRAM_2node", "title": "Bootstrapped iRAM (including replications of iRAM and corresponding time profiles) for the bivariate time-series (simts2node)", "topics": [ "bootstrap_iRAM_2node" ] }, { "page": "bootstrap_iRAM_3node", "title": "Bootstrapped iRAM (including replications of iRAM and corresponding time profiles) for the 3-variate time-series (simts)", "topics": [ "bootstrap_iRAM_3node" ] }, { "page": "iRAM", "title": "Generate iRAM (impulse response anlaysis metric) from model fit.", "topics": [ "iRAM" ] }, { "page": "iRAM_equilibrium", "title": "Generate iRAM (impulse response anlaysis metric) in the equilibrium form.", "topics": [ "iRAM_equilibrium" ] }, { "page": "model_summary", "title": "Provide model summary.", "topics": [ "model_summary" ] }, { "page": "parse_beta", "title": "Parse the beta from model fit object", "topics": [ "parse_beta" ] }, { "page": "plot_integrated_time_profile", "title": "Plot the time profiles in the integrated form", "topics": [ "plot_integrated_time_profile" ] }, { "page": "plot_iRAM_dist", "title": "Plot distribution of recovery time based on bootstrapped version of iRAM", "topics": [ "plot_iRAM_dist" ] }, { "page": "plot_network_graph", "title": "Plot the network graph", "topics": [ "plot_network_graph" ] }, { "page": "plot_time_profile", "title": "Plot time profiles given a time-series generated by impulse response analysis", "topics": [ "plot_time_profile" ] }, { "page": "simts_2node", "title": "Simulated bivariate time-series data", "topics": [ "simts_2node" ] }, { "page": "simts_3node", "title": "Simulated 3-variate time-series data", "topics": [ "simts_3node" ] }, { "page": "true_beta_2node", "title": "The true beta matrix (4 by 4) used in simulation.", "topics": [ "true_beta_2node" ] }, { "page": "true_beta_3node", "title": "The true beta matrix (6 by 6) used in simulation.", "topics": [ "true_beta_3node" ] }, { "page": "uSEM", "title": "Fit a multivariate time series with uSEM (unified Structural Equation Model).", "topics": [ "uSEM" ] }, { "page": "usemmodelfit", "title": "Model fitbased on similated time-series by uSEM.", "topics": [ "usemmodelfit" ] } ], "_readme": "https://github.com/cran/pompom/raw/HEAD/README.md", "_rundeps": [ "abind", "backports", "base64enc", "bslib", "cachem", "checkmate", "cli", "cluster", "colorspace", "corpcor", "cpp11", "data.table", "digest", "evaluate", "farver", "fastmap", "fdrtool", "fontawesome", "foreign", "Formula", "fs", "ggplot2", "glasso", "glue", "GPArotation", "gridExtra", "gtable", "gtools", "highr", "Hmisc", "htmlTable", "htmltools", "htmlwidgets", "igraph", "isoband", "jpeg", "jquerylib", "jsonlite", "knitr", "labeling", "lattice", "lavaan", "lifecycle", "magrittr", "MASS", "Matrix", "memoise", "mime", "mnormt", "nlme", "nnet", "numDeriv", "pbapply", "pbivnorm", "pkgconfig", "plyr", "png", "psych", "qgraph", "quadprog", "R6", "rappdirs", "RColorBrewer", "Rcpp", "reshape2", "rlang", "rmarkdown", "rpart", "rstudioapi", "S7", "sass", "scales", "stringi", "stringr", "tinytex", "vctrs", "viridisLite", "withr", "xfun", "yaml" ], "_vignettes": [ { "source": "Three_node_exmaple.Rmd", "filename": "Three_node_exmaple.html", "title": "Three-node Example to Compute iRAM (impulse response analysis metric)", "author": "Written by Xiao Yang", "engine": "knitr::rmarkdown", "headings": [ "Overview", "Outline of Tutorial", "Step 1. Prepare simulation of time-series data", "Set up a 3 node model", "Network graph", "Simulate time-series", "Plot the simulated time-series", "Step 2. Apply Intraindividual Variability Method (unified Structural SEM, uSEM) on multivariate time-series data", "Use uSEM to fit the model and parse parameters.", "Step 3. Apply a network analysis method (also called impulse reponse analysis) on person-specific network", "Set parameters for impulse response analysis", "Step 4. Calculate impulse response analysis metric (iRAM)", "Point estimation of iRAM", "Plot time profile", "Bootstraped iRAM", "Plot boostrapped time profiles", "Plot boostrapped iRAM distribution", "Check accuracy of iRAM estimation", "Summary statistics", "Integrated form of impulse respnose analysis", "Compute the equilibrium", "Plot the time profile in the integrated form" ], "created": "2018-01-11 11:04:04", "modified": "2021-02-14 23:40:02", "commits": 3 } ], "_score": 3.113943352306837, "_indexed": true, "_nocasepkg": "pompom", "_universes": [ "vwendy" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.2.1", "date": "2026-05-22T08:13:43.000Z", "distro": "noble", "commit": "3df1a4ce8648b28b7b9cf72f4d5b9d3bfc5b3db3", "fileid": "8c659ce0adbdeed1f7798d2dd5e1f304b35d7772bcd80b7f74b0ff2f1674105b", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/vwendy/actions/runs/26276224515" }, { "r": "4.6.0", "os": "linux", "version": "0.2.1", "date": "2026-05-22T08:13:26.000Z", "distro": "noble", "commit": "3df1a4ce8648b28b7b9cf72f4d5b9d3bfc5b3db3", "fileid": "3437b75c73900f2e4245b384ffdf7df048ca4ec2529e9372fbc1430d82c56e28", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/vwendy/actions/runs/26276224515" }, { "r": "4.5.3", "os": "mac", "version": "0.2.1", "date": "2026-05-22T08:13:32.000Z", "commit": "3df1a4ce8648b28b7b9cf72f4d5b9d3bfc5b3db3", "fileid": "21e6a617537cb434becb8c666a626ee713cb6ba7af85a549af38c28358f7ebc7", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/vwendy/actions/runs/26276224515" }, { "r": "4.6.0", "os": "mac", "version": "0.2.1", "date": "2026-05-22T08:13:03.000Z", "commit": "3df1a4ce8648b28b7b9cf72f4d5b9d3bfc5b3db3", "fileid": "cc597a07b10a0147f55b4cfa50d4f841a4a5422edf8bbc8e6bdf229677074cb8", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/vwendy/actions/runs/26276224515" }, { "r": "4.6.0", "os": "wasm", "version": "0.2.1", "date": "2026-05-22T08:13:23.000Z", "commit": "3df1a4ce8648b28b7b9cf72f4d5b9d3bfc5b3db3", "fileid": "3366b68be9883df4f9ce586897f679f09a5e10e93db31a4a4c1b136c9fa84393", "status": "success", "buildurl": "https://github.com/r-universe/vwendy/actions/runs/26276224515" }, { "r": "4.7.0", "os": "win", "version": "0.2.1", "date": "2026-05-22T08:12:25.000Z", "commit": "3df1a4ce8648b28b7b9cf72f4d5b9d3bfc5b3db3", "fileid": "b708c639d906c33a2f7d3480c690f9be390762ebd4477627ebf6d2a4526ac7a3", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/vwendy/actions/runs/26276224515" }, { "r": "4.5.3", "os": "win", "version": "0.2.1", "date": "2026-05-22T08:12:32.000Z", "commit": "3df1a4ce8648b28b7b9cf72f4d5b9d3bfc5b3db3", "fileid": "b4895cfbf75dda1a7dacf78782511d2116a47a8d6d1a08c65a13f3e4c9a425c4", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/vwendy/actions/runs/26276224515" }, { "r": "4.6.0", "os": "win", "version": "0.2.1", "date": "2026-05-22T08:12:15.000Z", "commit": "3df1a4ce8648b28b7b9cf72f4d5b9d3bfc5b3db3", "fileid": "8df1d97b9f1a140599a5fb99a5c8408ba263bd88d520a237542893146e94d5bd", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/vwendy/actions/runs/26276224515" } ] }